ASN.1 Type Definitions for Module NCBI-Seqset

Top-level module index.

Colors and Styles Used

ASN.1 primitive (non-container) type
ASN.1 container (SEQUENCE, SET, ...)
ASN.1 enumeration tag
Field name within ASN.1 container type
OPTIONAL/DEFAULT attribute of ASN.1 field
ASN.1 ANY type
Undefined ASN.1 type
References to user-defined types appear as links.

Type Bioseq-set

Uses

Date Dbtag Object-id Seq-annot Seq-descr Seq-entry

Is Used By

Blast4-queries Blast4-value Blast-search SeqEdit-Cmd-AttachSet Seq-entry

Bioseq-set ::=

SEQUENCE

{

id

Object-id OPTIONAL

coll

Dbtag OPTIONAL

level

INTEGER OPTIONAL

class

ENUMERATED	{
not-set	0
nuc-prot	1
segset	2
conset	3
parts	4
gibb	5
gi	6
genbank	7
pir	8
pub-set	9
equiv	10
swissprot	11
pdb-entry	12
mut-set	13
pop-set	14
phy-set	15
eco-set	16
gen-prod-set	17
wgs-set	18
named-annot	19
named-annot-prod	20
read-set	21
paired-end-reads	22
other	255
}

DEFAULT not-set

release

VisibleString OPTIONAL

date

Date OPTIONAL

descr

Seq-descr OPTIONAL

seq-set

SEQUENCE OF Seq-entry

annot

SET OF Seq-annot OPTIONAL

}

Type Seq-entry

Uses

Bioseq Bioseq-set

Is Used By

Bioseq-set Biostruc-align Biostruc-align-seq Biostruc-seq Biostruc-seqs Bundle-seqs-aligns Cdd Entrez-general Entrez-Seq-entry-list ID1SeqEntry-info ID1server-back ID2S-Split-Info Project-item Pssm SeqEdit-Cmd-AttachSeqEntry Seq-submit Suggest-intervals

Seq-entry ::=

CHOICE	{
seq	Bioseq
set	Bioseq-set
}

Top-level module index.